PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_09643.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 272aa MW: 31404.4 Da PI: 6.0968

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_09643.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.4	6e-49	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k +++ewyfFs rd+kyatg r+nrat sgyWkat Sme2.5_09643.1_g00001.1 10 LPPGFRFYPSDEELVCHYLFKKIANEDVLK-GTLVEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYATGFRTNRATISGYWKAT 94 79**********************9655.78***********87788899************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 gkd++v++ ++ vg++ktLvfy +rap+g kt W+mhe+rle Sme2.5_09643.1_g00001.1 95 GKDRTVVDPkTRMIVGMRKTLVFYLNRAPNGIKTGWIMHEFRLE 138 ****855667*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	56.956	10	156	IPR003441	NAC domain
Pfam	PF02365	7.7E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLFK KIANEDVLKG TLVEIDLHTC EPWQLPEVAK 60 LNSSEWYFFS FRDRKYATGF RTNRATISGY WKATGKDRTV VDPKTRMIVG MRKTLVFYLN 120 RAPNGIKTGW IMHEFRLENP HIPPKEDWVL CRVFHKGKGE NNSNSNNNIL NPRSMYEIGV 180 NTCPNMDQSH ALPYAAGTFS QRPVNHHQSQ NQSSYLQLMS QEMKEPLSSN DQMAEDDDYG 240 FLLDMNFEDP NLQNDSSIGN MRFDDENSLV FI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-49	9	156	19	168	NAC domain-containing protein 19
3swm_B	4e-49	9	156	19	168	NAC domain-containing protein 19
3swm_C	4e-49	9	156	19	168	NAC domain-containing protein 19
3swm_D	4e-49	9	156	19	168	NAC domain-containing protein 19
3swp_A	4e-49	9	156	19	168	NAC domain-containing protein 19
3swp_B	4e-49	9	156	19	168	NAC domain-containing protein 19
3swp_C	4e-49	9	156	19	168	NAC domain-containing protein 19
3swp_D	4e-49	9	156	19	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-112	HG975448.1 Solanum pennellii chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016565477.1	1e-165	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	4e-63	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	M1ANH8	1e-158	M1ANH8_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400026644	1e-158	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-96	NAC domain containing protein 74